4.1.6. statshic.py¶
Compute basic statistics about the given Hi-C dataset.
The statistics are the following:
- Mean
- Standard deviation
- Median
- Percentiles at 10, 25, 75 and 95%
Also report the dimensions of the matrices and their size (number of elements). For the whole datasets, only the size is given.
created: | August 2018 |
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last modified: | August 2018 |
4.1.6.1. Usage¶
Compute basic statistics about the given Hi-C dataset. The results are printed to standard output or written as JSON.
usage: statshic [-h] [-w] [-o OUTPUT] hic
4.1.6.1.1. Positional Arguments¶
hic | the Hi-C directory with the metadata.json file |
4.1.6.1.2. Named Arguments¶
-w, --whole-dataset | |
compute also the stats on the whole dataset; may use a lot of memory Default: False | |
-o, --output | the output file, in JSON |