4. Scripts and API documentation¶
About the pipeline:
- make_pairs.py which computes the contacts of pairs of genes.
- join_pairs.py which extracts the intersection of pairs from two tables of contacts. The intersection is computed using the orthologs.
- From there, we have two possibilities:
Tools (not exhaustive):
- statshic.py computes basic statistics over a dataset and output the results directly or write it as JSON.
- norm_center.py normalizes a buch of dataset in order to make them comparable with each other.
- informative_traits.py reports information about the traits that are informative, i.e. the traits that don’t have the same value in all species.